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Species belonging to selected taxon:
Panicum virgatum
ABOUT THIS RECORD
ID:
MNEST001848
species:
Panicum virgatum
miRNA family:
MIR159
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG
miRNA*
GAGCTCTCTTCCTTCCAATGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGCTGCTGCTTGGATTTGAAGCG
GAGCTCTCTTCCTTCCAATGA
AGGGTCGTTCTGAAGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTATCT
CATCGGCTTTGAGAGAGAGAGAGAGAGATTGTGAGGTCCGGTGAGATGATTGGCTTGAGATAGGCTTGTGGTTTGCATGGCCGAGGAGCTGCATCGTCCC
CTCTCCGACCGCTG
TTTGGATTGAAGGGAGCTCTG
CATCTCGATCCTCCCGTGTT
dot-bracket secondary structure
(((....))).(((((.((.(((
(((((((((((..(((((...
(((((((....((.(((((((.(((((.((((.(((((....((((.(((..((((
(((((((((((...((............)).))))).))))))))))))).((((((...)))))).))))....))))).)))).))))).)))).)))
.))..))))).)).
.)))))..)))))))))))))
).))..))))).........
SIMILARITIES
miRBase
sof-MIR159e
:
1e-33
PMRD
sof-miR159e
:
1e-33
microPC
miR319
:
2e-16
UniProt
no hits
RFAM
MIR159: 1e-24
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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